Trying to run KohGPI but needed to find SPRANNLIB which is not available for what I can see – but found GNU-i-fied version in clibs directory of http://sourceforge.net/projects/rlabplus/files/rlab/
This implementation also depends on the GNU Scientific Library (GSL) which you’ll need to build and install beforehand.
Then to build SPRANNLIB download and untar the rlab archive. Go to ‘clibs/sprannlib/src’ and type make. If things are in order it will make a library in ../lib called libsprann.a spr_$ARCH.a where $ARCH is your architecture (x86_64, etc).
The .a files can be deployed in your normal place for manual (non-RPM/DEB) installations (/usr/local/pkg/sprannlib for me with symlinks to the libraries in /usr/local/lib). Then go back and build kohgpi but you may need to update the Makefile so that the library paths point to your sprannlib installation location.
anonymous, 
emmanuelle, 
Fabien, and 3 others are discussing. 
Venky are discussing. 
Cruu-X 8:22 am on January 20, 2011 Permalink |
Thanks for the tip Jason!
Did you compare against big-PI? I am about to do that now.
Diego
Jason Stajich 11:01 am on January 20, 2011 Permalink |
I haven’t compared them yet, not – Tom did this for the Coccidioides project and they don’t overlap that much.
As it turns out this whole post is a little unnecessary as the compiled version that comes with the download for KohGPI works on most linux installs anyways, but it was good to at least figure out how to go from scratch if need be.
Cruu-X 11:22 am on January 20, 2011 Permalink
Yeah, I was just doing the comparison, and there is not much overlap. Ah well.
Leandro 12:34 pm on January 24, 2011 Permalink |
I found SPRANNLIB file, but I had many problems trying to compile it.
Fabien 12:07 am on June 21, 2011 Permalink |
Hi. I’m looking for Sprannlib but can’t find it. Has any of you a tarball ?
Jason Stajich 8:42 am on June 21, 2011 Permalink |
Did you go to the source forge page I referred to? That is where you can get the library and hence this post…
Fabien 11:15 pm on June 21, 2011 Permalink
Yes, I did. But R Lab Plus doesn’t include SprannLib anymore. Nonetheless, after a second look, I found out that a compiled version of kohgpi is included in the source tarball. And fortunately, it is compiled for the same architecture that I am using. Thanks, for your up.
emmanuelle 4:41 am on April 3, 2012 Permalink |
Hi. Do you know if there is anyway to have big-PI source code ?
anonymous 1:21 pm on April 19, 2012 Permalink |
Contact the author of rlabplus for the original sources of the library. I bet he has saved them for reference.